PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031803-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 242aa    MW: 26717.5 Da    PI: 4.4253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031803-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.3e-13347855
                 AP2  8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  WALNUT_00031803-RA  3 RHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 47
                        7888*******99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.448155IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-15357IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-15356IPR001471AP2/ERF domain
SMARTSM003805.3E-20361IPR001471AP2/ERF domain
PfamPF008474.5E-9347IPR001471AP2/ERF domain
CDDcd000187.48E-13357No hitNo description
Gene3DG3DSA:3.30.730.102.7E-66793IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-56794IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MCRHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAAAYDM AAIEYRGLNA VTNFDLSRYI  60
KWLRPATQEE AAAAYDMAAI EYRGLNAVTN FDLSRYIKWL RPGNQNSPTN PNDSEPNTNL  120
EPGLSLVSNQ AANSSTTATD MTLADPVLRP RPGAGGSASS ALELLFQSSK FKEMLETTSV  180
VDSSPPTSQE SEPPRRSFPD DIQTYFDCQD SGNLYAESED IIFGDLNSIA SVPIFDCEHL  240
GP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067459.12e-75PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016457719.14e-75PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A067KRL41e-71A0A067KRL4_JATCU; Uncharacterized protein
STRINGPGSC0003DMT4000367071e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.22e-25ARIA-interacting double AP2 domain protein